| 2025 | Scriver, Michelle and von Ammon, Ulla and Pochon, Xavier and Jeunen, Gert-Jan and Leonard, Kate and Audrezet, Fran{\c c}ois and Gemmell, Neil J. and Stanton, Jo-Ann L. and Zaiko, Anastasija: Biodiversity monitoring in remote marine environments: Advancing environmental DNA/RNA sampling workflows. In: Marine Environmental Research, 206, 2025, 107041 |
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| 2025 | Scriver, Michelle and Zaiko, Anastasija and Pochon, Xavier and Stanton, Jo-Ann L. and Belonovich, Olga and Jeunen, Gert-Jan and Thomas, Austen C. and Gemmell, Neil J. and von Ammon, Ulla: Biodiversity monitoring in remote marine environments: Advancing environmental DNA/RNA sampling workflows. In: Marine Environmental Research, 206, 2025, 107041 |
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| 2025 | Scriver, Michelle and von Ammon, Ulla and Pochon, Xavier and Arranz, Ver{\'o}nica and Stanton, Jo-Ann L. and Gemmell, Neil J. and Zaiko, Anastasija: Environmental DNA--RNA dynamics provide insights for effective monitoring of marine invasive species. In: Environmental DNA, 6, 2025, e531 |
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| 2025 | Kumanan, Karthiga and Carson, Jeremy and Hunter, Ryan B. J. and Rolton, Anne and von Ammon, Ulla and Bandaranayake, Chaya and Angelucci, Connie and Morrison, Richard N. and Walker, Seumas P. and Symonds, Jane E. and Hutson, Kate S.: Experimental Challenge of Chinook Salmon (\textit{Oncorhynchus tshawytscha}) With \textit{Tenacibaculum maritimum} and \textit{Tenacibaculum dicentrarchi} Fulfils Koch's Postulates. In: Journal of Fish Diseases, 48, 2025, e14088 |
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| 2025 | Kumanan, Kanimozhi and Carson, Jody and Hunter, R. B. J. and Rolton, Alexander and von Ammon, Ulla and Bandaranayake, Chamini and Angelucci, Chiara and Morrison, Rhys N. and Walker, Stephen P. and Symonds, Jane E. and Hutson, Kate S.: Experimental challenge of Chinook salmon with \textit{Tenacibaculum maritimum} and \textit{Tenacibaculum dicentrarchi} fulfils Koch’s postulates. In: Journal of Fish Diseases, 2025, |
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| 2025 | von Ammon, Ulla and Jeunen, Gert-Jan and Laroche, Olivier and Pochon, Xavier and Gemmell, Neil J. and Stanton, Jo-Ann L. and Zaiko, Anastasija: Investigating passive eDNA samplers and submergence times for marine surveillance. In: PeerJ, 13, 2025, e19043 |
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| 2025 | Delisle, Lizenn and Bui, Tony and Copedo, Joanna and Laroche, Olivier and von Ammon, Ulla and Lane, Henry S. and Hutson, Kate S.: Isolation, culture, and optimal growth conditions for the shellfish protozoan parasite, \textit{Perkinsus olseni}. In: International Journal for Parasitology, 55, 2025, 339--350 |
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| 2025 | Gösser, Fabian and Hakim, A. A. and Lalas, J. A. A. and Clavenna, Matteo and Monroy, Maria P. M. and von Ammon, Ulla and Gomez, Rafael and Reimer, James D.: Mellow Yellow: Exploring yellow soft coral dominance at Ama Beach, Kerama Shot{\=o} National Park, southern Japan. In: Regional Studies in Marine Science, 88, 2025, 104236 |
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| 2025 | von Ammon Ulla Olivier Laroche, Emma Gairin, Saori Miura, Jeffrey Jolly, Vincent Laudet, Tim Ravasi, Anastasija Zaiko, Michelle Scriver, James Reimer: Using environmental DNA to understand the distribution of anthropogenically derived pathogens in Okinawa’s coastal environments. In: Diseases of aquatic organisms, 2025, |
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| 2024 | Dur{\'a}n-Vinet, Benjam{\'i}n and Stanton, Jo-Ann L. and Jeunen, Gert-Jan and von Ammon, Ulla and Treece, Jacob and others: CRISPR-based environmental biosurveillance assisted via artificial intelligence design of guide-RNAs. In: bioRxiv, 2024, |
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| 2024 | Scriver, Michelle and von Ammon, Ulla and Youngbull, Cody and Pochon, Xavier and Stanton, Jo-Ann L. and Gemmell, Neil J. and Zaiko, Anastasija: Drop it all: extraction-free detection of targeted marine species through optimized direct droplet digital PCR. In: PeerJ, 12, 2024, e16969 |
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| 2024 | Scriver, Michelle and von Ammon, Ulla and Pochon, Xavier and Zirngibl, Maximilian and Audrezet, Fabien and Leonard, Kate and Pedersen, Kylie and Bamford, Nick and Tahere, Ngairo and Stanton, Jo-Ann L. and Gemmell, Neil J. and Zaiko, Anastasija: Ebbs and Flows of Marine Biodiversity: Navigating Spatiotemporal Patterns of Environmental DNA in a Coastal Tidal Ecosystem. In: Environmental DNA, 6, 2024, e70039 |
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| 2024 | Pochon, Xavier and Laroche, Olivier and von Ammon, Ulla and Zaiko, Anastasija: Filter no more: a modified plankton sampler for rapid in-water eDNA capture. In: Methods in Ecology and Evolution, 15, 2024, 60--68 |
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| 2023 | Clarke, Laurence J. and Shaw, Justine D. and Suter, Laura and Atalah, Javier and Bergstrom, Dana M. and Biersma, Elisabeth and Convey, Peter and Greve, Matthias and Holland, Olivia and Houghton, Matthew J. and Hughes, Kevin A. and Johnston, Emma L. and King, Catherine K. and McCarthy, Arlie and McGaughran, Angela and Pertierra, Luis R. and Robinson, Sharon A. and Sherman, Craig D. H. and Stark, Jonathan S. and Stevens, Mark I. and Strugnell, Jan M. and von Ammon, Ulla and Wilson, Nerida G. and Zaiko, Anastasija and MacDonald, Anna J.: An expert-driven framework for applying eDNA tools to improve biosecurity in the Antarctic. In: Management of Biological Invasions, 14, 2023, 379--402 |
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| 2023 | Jeunen, Gert-Jan and Cane, Jasmine S. and Ferreira, Sara and Strano, Francesca and von Ammon, Ulla and Cross, Hugh and Day, Robert and Hesseltine, Sean and Ellis, Kaleb and Urban, Lara and Pearson, Niall and Olmedo-Rojas, Pamela and Kardailsky, Anya and Gemmell, Neil J. and Lamare, Miles: Assessing the utility of marine filter feeders for environmental DNA (eDNA) biodiversity monitoring. In: Molecular Ecology Resources, 23, 2023, 771--786 |
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| 2023 | Jeunen, Gert-Jan and Dowle, Eddy and Edgecombe, Jonika and von Ammon, Ulla and Gemmell, Neil J. and Cross, Hugh: CRABS---A software program to generate curated reference databases for metabarcoding sequencing data. In: Molecular Ecology Resources, 23, 2023, 725--739 |
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| 2023 | Scriver, Michelle and Zaiko, Anastasija and Pochon, Xavier and von Ammon, Ulla: Harnessing decay rates for coastal marine biosecurity applications: A review of environmental DNA and RNA fate. In: Environmental DNA, 5, 2023, 1173--1187 |
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| 2023 | von Ammon, Ulla and Casanovas, Paula and Pochon, Xavier and Zirngibl, Maximilian and Leonard, Kate and Smith, Alex and Chetham, Jane and Milner, David and Zaiko, Anastasija: Harnessing environmental DNA to reveal biogeographical patterns of non-indigenous species for improved co-governance of the marine environment in Aotearoa New Zealand. In: Scientific Reports, 13, 2023, 17061 |
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| 2023 | von Ammon, Ulla and Pochon, Xavier and Casanovas, Paula and Trochel, Branwen and Zirngibl, Maximilian and Thomas, Austen and Witting, Jan and Joyce, Paul and Zaiko, Anastasija: Net overboard: comparing marine eDNA sampling methodologies at sea to unravel marine biodiversity. In: Molecular Ecology Resources, 23, 2023, 440--452 |
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| 2023 | Zaiko, Anastasija and Scheel, Maximilian and Schattschneider, Jessica and von Ammon, Ulla and Scriver, Michelle and Pochon, Xavier and Pearman, John K.: Pest Alert Tool---a web-based application for flagging species of concern in metabarcoding datasets. In: Nucleic Acids Research, 51, 2023, W438--W442 |
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| 2022 | Zirngibl, Maximilian and von Ammon, Ulla and Pochon, Xavier and Zaiko, Anastasija: A rapid molecular assay for detecting the Mediterranean fanworm \textit{Sabella spallanzanii} trialed by non-scientist users. In: Frontiers in Marine Science, 9, 2022, 861657 |
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| 2022 | Kumanan, Kanimozhi and von Ammon, Ulla and Fidler, Andrew and Symonds, Jane E. and Walker, Stephen P. and Carson, Jody and Hutson, Kate S.: Advantages of selective medium for surveillance of \textit{Tenacibaculum} species in marine fish aquaculture. In: Aquaculture, 558, 2022, 738365 |
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| 2022 | von Ammon, Ulla and Averink, Teresa and Kumanan, Kanimozhi and Brosnahan, Clare L. and Pochon, Xavier and Hutson, Kate S. and Symonds, Jane E.: An Efficient Tetraplex Surveillance Tool for Salmonid Pathogens. In: Frontiers in Microbiology, 13, 2022, 885585 |
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| 2022 | Zaiko, Anastasija and von Ammon, Ulla and Stuart, Jacqui and Smith, Kirsty F. and Yao, Richard and Welsh, Melissa and Pochon, Xavier and Bowers, Holly A.: Assessing the performance and efficiency of environmental DNA/RNA capture methodologies under controlled experimental conditions. In: Methods in Ecology and Evolution, 13, 2022, 1581--1594 |
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| 2022 | Brand, Sarah C. and Jeffs, Andrew G. and von Ammon, Ulla and Zaiko, Anastasija: Assessing the presence, settlement and growth of the invasive Mediterranean fanworm, \textit{Sabella spallanzanii}, on mussel farms. In: Journal of Experimental Marine Biology and Ecology, 554, 2022, 151767 |
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| 2022 | Zaiko, Anastasija and Greenfield, Patrick and Abbott, Cathryn and von Ammon, Ulla and Bilewitch, Jaret and Bunce, Michael and Cristescu, Monica E. and Chariton, Anthony and Dowle, Eddy and Geller, Jonathan and Ardura Guti{\'e}rrez, Alba and others: Towards reproducible metabarcoding data---lessons from an international cross-laboratory experiment. In: Molecular Ecology Resources, 22, 2022, 519--538 |
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| 2022 | O'Rorke, Richard and van der Reis, Aimee and von Ammon, Ulla and Beckley, Lynnath E. and Pochon, Xavier and Zaiko, Anastasija and Jeffs, Andrew: eDNA metabarcoding shows latitudinal eukaryote micro- and mesoplankton diversity stabilizes across oligotrophic region of a >3000 km longitudinal transect in the Indian Ocean. In: Deep Sea Research Part II: Topical Studies in Oceanography, 205, 2022, 105178 |
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| 2021 | Pearman, John K. and von Ammon, Ulla and Laroche, Olivier and Zaiko, Anastasija and Wood, Susanna A. and Zubia, Mayalen and Planes, Serge and Pochon, Xavier: Metabarcoding as a tool to enhance marine surveillance of nonindigenous species in tropical harbors: A case study in Tahiti. In: Environmental DNA, 3, 2021, 173--189 |
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| 2021 | Bowers, Holly A. and Pochon, Xavier and von Ammon, Ulla and Gemmell, Neil and Stanton, Jo-Ann L. and Jeunen, Gert-Jan and Sherman, Craig D. H. and Zaiko, Anastasija: Towards the Optimization of eDNA/eRNA Sampling Technologies for Marine Biosecurity Surveillance. In: Water, 13, 2021, 1113 |
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| 2020 | von Ammon, Ulla and Jeffs, Andrew and Zaiko, Anastasija and van der Reis, Aimee and Goodwin, David and Beckley, Lynnath E. and Malpot, Emmanuel and Pochon, Xavier: A portable cruising speed net: Expanding global collection of sea surface plankton data. In: Frontiers in Marine Science, 7, 2020, 615458 |
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| 2020 | Wood, Susanna A. and Biessy, Leonardo and Latchford, Jennifer L. and Zaiko, Anastasija and von Ammon, Ulla and Audrezet, Fabien and Cristescu, Monica E. and Pochon, Xavier: Release and degradation of environmental DNA and RNA in a marine system. In: Science of the Total Environment, 704, 2020, 135314 |
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| 2019 | Wood, Susanna A. and Pochon, Xavier and Laroche, Olivier and von Ammon, Ulla and Adamson, Jess and Zaiko, Anastasija: A comparison of droplet digital PCR (ddPCR), quantitative PCR and metabarcoding for the detection of environmental DNA from the invasive Mediterranean fanworm (\textit{Sabella spallanzanii}). In: Molecular Ecology Resources, 19, 2019, 1407--1419 |
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| 2019 | von Ammon, Ulla and Wood, Susanna A. and Laroche, Olivier and Zaiko, Anastasija and Lavery, Shannon D. and Inglis, Graeme J. and Pochon, Xavier: Linking Environmental DNA and RNA for Improved Detection of the Marine Invasive Fanworm \textit{Sabella spallanzanii}. In: Frontiers in Marine Science, 6, 2019, 621 |
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| 2018 | von Ammon, Ulla and Wood, Susanna A. and Laroche, Olivier and Zaiko, Anastasija and Tait, Leigh and Lavery, Shannon and Inglis, Graeme J. and Pochon, Xavier: Combining morpho-taxonomy and metabarcoding enhances the detection of non-indigenous marine pests in biofouling communities. In: Scientific Reports, 8, 2018, 16290 |
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| 2018 | Nowak, Petra and Steinhardt, Tim and von Ammon, Ulla and Rohde, Henning and Schaible, Ralf and Schoor, Arne and Holzhausen, Anja and Schubert, Hendrik: Diaspore bank analysis of Baltic coastal waters. In: Botany Letters, 165, 2018, 159--173 |
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| 2018 | von Ammon, Ulla and Wood, Susanna A. and Laroche, Olivier and Zaiko, Anastasija and Tait, Leigh and Lavery, Shannon and Inglis, Graeme J. and Pochon, Xavier: The impact of artificial surfaces on marine bacterial and eukaryotic biofouling assemblages: a high-throughput sequencing analysis. In: Marine Environmental Research, 133, 2018, 57--66 |
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| 2016 | Muangmai, Nuttapol and von Ammon, Ulla and Zuccarello, Giuseppe C.: Cryptic species in sympatry: nonrandom small-scale distribution patterns in \textit{Bostrychia intricata} (Ceramiales, Rhodophyta). In: Phycologia, 55, 2016, 424--430 |
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| 2016 | Schneider, Susanne C. and Nowak, Petra and von Ammon, Ulla and Ballot, Andreas: Species differentiation in the genus \textit{Chara} (Charophyceae): considerable phenotypic plasticity occurs within homogeneous genetic groups. In: European Journal of Phycology, 51, 2016, 282--293 |
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